R markdown pandoc document conversion failed with error 1 after updating pandoc from 1.19 to 2.4
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I recently installed pandoc 2.4 on Windows and the conversion failed with error 1 occurs for all knitting. I can't knit html, word, and pdf.
The error says
output file: template.knitmd
pandoc.exe: template.utf8.md: openBinaryFile: does not exist (No such file or directory)
Error: pandoc document conversion failed with error 1
Execusion halted
This happens to even the raw basic template rmd file.
I am using a closed network without internet connection and limited writing permission. Previously I was able to knit rmd files located in documents folder generating outputs in same location.
The sessionInfo() says
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: windows >=8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_collate=english_united states.1252 lc_ctype=english_united states.1252 lc_monetary=english_united states.1252
[4] LC_Numeric=C LC_TIME=english_united states.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flextable_0.4.5 officer_0.3.2 knitr_1.20 rmarkdown_1.10
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 digest_0.6.18 rprojroot_1.3-2 R6_2.3.0 backports_1.1.2 magrittr_1.5 evaluate_0.12
[8]zip_1.0.0 stringi_1.2.4 gdtools_0.1.7 uuid_0.1-2 xml2_1.2.0 tools_3.5.1 stringr_1.3.1
[15] yaml_2.2.0 compiler_3.5.1 base64enc_0.1-3 htmltools_0.3.6
Any advice will be highly appreciated. (Or even ways how to change the settings back to old pandoc version without deleting the version 2.4.)
rstudio r-markdown knitr pandoc document-conversion
edited Nov 20 at 10:46
Ralf Stubner
13.4k21437
asked Nov 19 at 23:24
Moses Kim
111
add a comment |
up vote
2
down vote
favorite
I recently installed pandoc 2.4 on Windows and the conversion failed with error 1 occurs for all knitting. I can't knit html, word, and pdf.
The error says
output file: template.knitmd
pandoc.exe: template.utf8.md: openBinaryFile: does not exist (No such file or directory)
Error: pandoc document conversion failed with error 1
Execusion halted
This happens to even the raw basic template rmd file.
I am using a closed network without internet connection and limited writing permission. Previously I was able to knit rmd files located in documents folder generating outputs in same location.
The sessionInfo() says
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: windows >=8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_collate=english_united states.1252 lc_ctype=english_united states.1252 lc_monetary=english_united states.1252
[4] LC_Numeric=C LC_TIME=english_united states.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flextable_0.4.5 officer_0.3.2 knitr_1.20 rmarkdown_1.10
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 digest_0.6.18 rprojroot_1.3-2 R6_2.3.0 backports_1.1.2 magrittr_1.5 evaluate_0.12
[8]zip_1.0.0 stringi_1.2.4 gdtools_0.1.7 uuid_0.1-2 xml2_1.2.0 tools_3.5.1 stringr_1.3.1
[15] yaml_2.2.0 compiler_3.5.1 base64enc_0.1-3 htmltools_0.3.6
Any advice will be highly appreciated. (Or even ways how to change the settings back to old pandoc version without deleting the version 2.4.)
rstudio r-markdown knitr pandoc document-conversion
edited Nov 20 at 10:46
Ralf Stubner
13.4k21437
asked Nov 19 at 23:24
Moses Kim
111
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 at 19:59
add a comment |
up vote
2
down vote
favorite
up vote
2
down vote
favorite
I recently installed pandoc 2.4 on Windows and the conversion failed with error 1 occurs for all knitting. I can't knit html, word, and pdf.
The error says
output file: template.knitmd
pandoc.exe: template.utf8.md: openBinaryFile: does not exist (No such file or directory)
Error: pandoc document conversion failed with error 1
Execusion halted
This happens to even the raw basic template rmd file.
I am using a closed network without internet connection and limited writing permission. Previously I was able to knit rmd files located in documents folder generating outputs in same location.
The sessionInfo() says
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: windows >=8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_collate=english_united states.1252 lc_ctype=english_united states.1252 lc_monetary=english_united states.1252
[4] LC_Numeric=C LC_TIME=english_united states.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flextable_0.4.5 officer_0.3.2 knitr_1.20 rmarkdown_1.10
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 digest_0.6.18 rprojroot_1.3-2 R6_2.3.0 backports_1.1.2 magrittr_1.5 evaluate_0.12
[8]zip_1.0.0 stringi_1.2.4 gdtools_0.1.7 uuid_0.1-2 xml2_1.2.0 tools_3.5.1 stringr_1.3.1
[15] yaml_2.2.0 compiler_3.5.1 base64enc_0.1-3 htmltools_0.3.6
Any advice will be highly appreciated. (Or even ways how to change the settings back to old pandoc version without deleting the version 2.4.)
rstudio r-markdown knitr pandoc document-conversion
edited Nov 20 at 10:46
Ralf Stubner
13.4k21437
asked Nov 19 at 23:24
Moses Kim
111
I recently installed pandoc 2.4 on Windows and the conversion failed with error 1 occurs for all knitting. I can't knit html, word, and pdf.
The error says
output file: template.knitmd
pandoc.exe: template.utf8.md: openBinaryFile: does not exist (No such file or directory)
Error: pandoc document conversion failed with error 1
Execusion halted
This happens to even the raw basic template rmd file.
I am using a closed network without internet connection and limited writing permission. Previously I was able to knit rmd files located in documents folder generating outputs in same location.
The sessionInfo() says
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: windows >=8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_collate=english_united states.1252 lc_ctype=english_united states.1252 lc_monetary=english_united states.1252
[4] LC_Numeric=C LC_TIME=english_united states.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flextable_0.4.5 officer_0.3.2 knitr_1.20 rmarkdown_1.10
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 digest_0.6.18 rprojroot_1.3-2 R6_2.3.0 backports_1.1.2 magrittr_1.5 evaluate_0.12
[8]zip_1.0.0 stringi_1.2.4 gdtools_0.1.7 uuid_0.1-2 xml2_1.2.0 tools_3.5.1 stringr_1.3.1
[15] yaml_2.2.0 compiler_3.5.1 base64enc_0.1-3 htmltools_0.3.6
Any advice will be highly appreciated. (Or even ways how to change the settings back to old pandoc version without deleting the version 2.4.)
rstudio r-markdown knitr pandoc document-conversion
rstudio r-markdown knitr pandoc document-conversion
edited Nov 20 at 10:46
Ralf Stubner
13.4k21437
asked Nov 19 at 23:24
Moses Kim
111
edited Nov 20 at 10:46
Ralf Stubner
13.4k21437
asked Nov 19 at 23:24
Moses Kim
111
edited Nov 20 at 10:46
Ralf Stubner
13.4k21437
edited Nov 20 at 10:46
Ralf Stubner
13.4k21437
edited Nov 20 at 10:46
Ralf Stubner
13.4k21437
13.4k21437
asked Nov 19 at 23:24
Moses Kim
111
asked Nov 19 at 23:24
Moses Kim
111
asked Nov 19 at 23:24
Moses Kim
111
111
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 at 19:59
add a comment |
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 at 19:59
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 at 15:13
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 at 19:59
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 at 19:59
add a comment |
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I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 at 19:59