Add regression line to a GenePlot in Seurat
I am doing a gene-gene correlation analysis with Seurat on a specific cluster of my scRNAseq data and I would like to add a regression line to my plot.
This is what I did:
TSNEPlot(object = SampleA,do.label=TRUE)
WhichCells(object = SampleA, ident = "2")
SampleA2.subset <- SubsetData(object = SampleA, ident.use = c("2")) #2 is my cluster of interest
GenePlot(YSa2.subset, "Itgam", "Elf1")
I believe I have to use the function abline, but I can’t get it to work in Seurat.
Has anyone had the same issue and can help me? Or is there a different way to do it that I am not aware of?
Thank you very much for your time!
r regression line
edited Nov 21 '18 at 15:04
David
10.7k63451
asked Nov 21 '18 at 14:49
Michela Frascoli
11
add a comment |
I am doing a gene-gene correlation analysis with Seurat on a specific cluster of my scRNAseq data and I would like to add a regression line to my plot.
This is what I did:
TSNEPlot(object = SampleA,do.label=TRUE)
WhichCells(object = SampleA, ident = "2")
SampleA2.subset <- SubsetData(object = SampleA, ident.use = c("2")) #2 is my cluster of interest
GenePlot(YSa2.subset, "Itgam", "Elf1")
I believe I have to use the function abline, but I can’t get it to work in Seurat.
Has anyone had the same issue and can help me? Or is there a different way to do it that I am not aware of?
Thank you very much for your time!
r regression line
edited Nov 21 '18 at 15:04
David
10.7k63451
asked Nov 21 '18 at 14:49
Michela Frascoli
11
add a comment |
I am doing a gene-gene correlation analysis with Seurat on a specific cluster of my scRNAseq data and I would like to add a regression line to my plot.
This is what I did:
TSNEPlot(object = SampleA,do.label=TRUE)
WhichCells(object = SampleA, ident = "2")
SampleA2.subset <- SubsetData(object = SampleA, ident.use = c("2")) #2 is my cluster of interest
GenePlot(YSa2.subset, "Itgam", "Elf1")
I believe I have to use the function abline, but I can’t get it to work in Seurat.
Has anyone had the same issue and can help me? Or is there a different way to do it that I am not aware of?
Thank you very much for your time!
r regression line
edited Nov 21 '18 at 15:04
David
10.7k63451
asked Nov 21 '18 at 14:49
Michela Frascoli
11
I am doing a gene-gene correlation analysis with Seurat on a specific cluster of my scRNAseq data and I would like to add a regression line to my plot.
This is what I did:
TSNEPlot(object = SampleA,do.label=TRUE)
WhichCells(object = SampleA, ident = "2")
SampleA2.subset <- SubsetData(object = SampleA, ident.use = c("2")) #2 is my cluster of interest
GenePlot(YSa2.subset, "Itgam", "Elf1")
I believe I have to use the function abline, but I can’t get it to work in Seurat.
Has anyone had the same issue and can help me? Or is there a different way to do it that I am not aware of?
Thank you very much for your time!
r regression line
r regression line
edited Nov 21 '18 at 15:04
David
10.7k63451
asked Nov 21 '18 at 14:49
Michela Frascoli
11
edited Nov 21 '18 at 15:04
David
10.7k63451
asked Nov 21 '18 at 14:49
Michela Frascoli
11
edited Nov 21 '18 at 15:04
David
10.7k63451
edited Nov 21 '18 at 15:04
David
10.7k63451
edited Nov 21 '18 at 15:04
David
10.7k63451
10.7k63451
asked Nov 21 '18 at 14:49
Michela Frascoli
11
asked Nov 21 '18 at 14:49
Michela Frascoli
11
asked Nov 21 '18 at 14:49
Michela Frascoli
11
11
add a comment |
add a comment |
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